Autors: Gieva, E. E., Rusev, R. P., Angelov, G. V., Radonov, R. I., Takov, T. B., Hristov, M. H. Title: Behavioral Model of Hydrogen Bonding Network for Digital Signal Processing Keywords: Hydrogen bonding network, behavioral modeling, Verilog-a, prAbstract: A circuit schematic is extracted from β-lactamase protein hydrogen bonding network. The circuit is consisting of block-elements that functionally represent the hydrogen bonds. The behavioral description of each block element is represented by polynomials. Polynomials and electric connections between the elements are coded in Matlab and Verilog-A. DC, transient, and digital analyses are performed. Simulations proved that the circuit can process digital signals and behaves similarly to current mirror, amplifier, and inverter. References - Elitsa Gieva, Rostislav Rusev, George Angelov, Rossen Radonov, Marin Hristov and Tihomir Takov, Protein application in electronics, 14th International workshop on Nanoscience and Nanotechnology, NANO'2012, 22.11.2012 - 23.11.2012
- Claudio Nicolini, Molecular Bioelectronics, Singapore NewJersey*London Hong Kong, ISBN 981-02-2685-3, 1996
- Evgeniy V. Gromov, Irene Burghardtc, Horst Köppel, Lorenz S. Cederbaum, "Native hydrogen bonding network of the photoactive yellow protein (PYP) chromophore: Impact on the electronic structure and photoinduced isomerization", Journal of Photochemistry and Photobiology A: Chemistry 234 (2012) 123– 134
- M. Salomé Sirerol-Piquera, Arantxa Cebrián- Silla, Clara Alfaro-Cervelló, Ulises Gomez- Pinedo, Mario Soriano-Navarro, José-Manuel García Verdugo, "GFP immunogold staining, from light to electron microscopy, in mammalian cells", journal Micron 43 (2012) 589–599.
- G.E. Adamov, A.G. Devyatkov, L.N. Gnatyuk, I.S. Goldobin, E.P. Grebennikov, "Bacteriorhodopsin—Perspective biomaterial for molecular nanophotonics", Journal of Photochemistry and Photobiology A: Chemistry 196 (2008) 254–261.
- Jeffrey A Stuarta, Duane L Marcya, Kevin J Wiseb, Robert R Birgeb, “Volumetric optical memory based on bacteriorhodopsin”, Synthetic Metals, Volume 127, Issues 1–3, 26 March 2002, Pages 3–15;
- K. L. Kompa and R. D. Levine, A molecular logic gate, 410–414, PNAS, vol. 98, no. 2 January 16, 2001
- R. Rusev, G. Angelov, T. Takov, M. Hristov Analogy Between Hydrogen Bonding Network and Microelectronic Circuit, MIXDES 2009, Proceedings of 16th international conference “Mixed Design of Integrated Circuits and Systems”, June 25-27, 2009, Lódz, Poland, pp. 402-405, ISBN 978-83-928756-0-4.
- Rostislav Rusev, Boris Atanasov, Tihomir Takov, Marin Hristov, Microelectronics Models of Protein Hydrogen Bonds, E+E, pp. 3 – 6, 2009, ISSN 0861-4717
- Markus A., V. Helms (2001). Compact Parameter Set for Fast Estimation of Proton Transfer Rates, J. Phys. Chem., 114(3), http://dx.doi.org/10.1063/1.1332993.
- D. Fitzpatrick, I. Miller, Analog Behavioral Modeling with the Verilog-A Language, Kluwer Academic Publishers, New York, Boston, Dordrecht, London, Moscow, 2003, pp 41-86, ISBN: 0-7923-8044-4
- Cadence Inc, Custom IC Design, http://www.cadence.com/ Products, (2013).
- David N. Silverman, “Marcus rate theory applied to enzymatic proton transfer”, Biochimica et Biophysica Acta (BBA) – Bioenergetics, Volume 1458, Issue 1, 12 May 2000, Pages 88–103
- Matlab site http://www.mathworks.com/
Issue
| WSEAS TRANSACTIONS on CIRCUITS and SYSTEMS, vol. 12, issue 9, pp. 286 - 295, 2013, Greece, ISSN 2224-266X |
Copyright WSEAS TRANSACTIONS on CIRCUITS and SYSTEMS |