Autors: Borovska, P. I., Gancheva, V. S., Georgiev I G.
Title: Hybrid Parallel Implementation of Multiple Sequence Alignment Software ClustalW on Intel Xeon Phi
Keywords: bioinformatics

Abstract: This work is aimed to investigate and to improve the performance of multiple sequence alignment software ClustalW on the test platform EURORA at CINECA, for the case study of the influenza virus sequences. The objective is code optimization, porting, scaling and performance evaluation of parallel multiple sequence alignment software ClustalW for Intel Xeon Phi (the MIC architecture). For this purpose a parallel multithreaded optimization including OpenMP has been implemented and verified. The experimental results show that the hybrid parallel implementation utilizing MPI and OpenMP provides considerably better performance than the original code.

References

    Issue

    Sixth International Conference on Advances in Computing, Electronics and Communication, 2017, Switzerland, DOI: 10.15224/978-1-63248-138-2-10

    Цитирания (Citation/s):
    1. Piña JS, Orozco-Arias S, Tobón-Orozco N, Camargo-Forero L, Tabares-Soto R, Guyot R. G-SAIP: Graphical Sequence Alignment Through Parallel Programming in the Post-Genomic Era. Evolutionary Bioinformatics. 2023;19. doi:10.1177/11769343221150585 - 2023 - в издания, индексирани в Scopus или Web of Science

    Вид: публикация в международен форум, публикация в реферирано издание, индексирана в Scopus